Doç. Dr. Ibrahim YAMAN

Contact:
Boğaziçi University
Molecular Biology and Genetics
Kuzey Park, 301
34342 Bebek - Istanbul

ibrahim.yaman@boun.edu.tr
+90 (212) 359 7557
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Research


Molecular mechanisms underlying carcinogenicity of mycotoxins

Mycotoxins are secondary metabolites that are produced by filamentous fungi, which mainly belong to Aspergillus, Penicillium and Fusarium genera. Deterioration of liver or kidney functions and in extreme cases death are among the acute effects of mycotoxins. The most important chronic effect of many mycotoxins is the induction of cancer development, especially in the liver and kidney tissues. The studies conducted in my lab are focused on identification of molecular mechanisms leading to induction of cancer by mycotoxin Ochratoxin A (OTA) using an integrative toxicogenomic approach including transcriptomics and proteomics. These studies will further advance our understanding of the mechanism(s) of OTA carcinogenicity and signal transduction pathways.




Selected Publications


  • Akpinar HA, Kahraman H, and Yaman I (2019) Ochratoxin A sequentially activates autophagy and the Ubiquitin-Proteasome System. Toxins (Basel), 11(11). doi:10.3390/toxins11110615.

  • Özcan Z, Gül G, and Yaman I (2015) Ochratoxin A activates opposing c-MET/PI3K/Akt and MAPK/ERK 1-2 pathways in human proximal tubule HK-2 cells.
    Arch Toxic. 89(8):1313-27. doi: 10.1007/s00204-014-1311-x.

  • Majumder M, Yaman I , Gaccioli F, Zeenko VV, Wang C, Caprara MG, Venema RC, Komar AA, Snider MD, and Hatzoglou M. (2009) The hnRNA-binding proteins hnRNP L and PTB are required for efficient translation of the Cat-1 arginine/lysine transporter mRNA during amino acid starvation.
    Mol Cell Biol. 2009, 29(10):2899-912.

  • Lopez AB, Wang C, Huang CC, Yaman I, Li Y, Chakravarty K, Johnson PF, Chiang CM, Snider MD, Wek RC, and Hatzoglou M. (2007) A feedback transcriptional mechanism controls the level of the arginine/lysine transporter cat-1 during amino acid starvation. The Biochemical Journal, 402(1), 163–173. https://doi.org/10.1042/BJ20060941

  • Fernandez J, Yaman I, Huang C, Liu H, Lopez A B, Komar A A, Caprara M G, Merrick W G, Snider M D, Kaufman R J, Lamers W H, and Hatzoglou M (2005)
    Ribosome stalling regulates IRES-mediated translation in eukaryotes, a parallel to prokaryotic attenuation.
    Mol. Cell. 17(3):405-16.

  • Hatzoglou M, Fernandez J, Yaman I, Closs E. (2004) Regulation of cationic amino acid transport: the story of the CAT-1 transporter.
    Annu Rev Nutr 24:377-99.

  • Fernandez J, Lopez AB, Wang C, Mishra R, Zhou L, Yaman I, Snider MD, Hatzoglou M (2003) Transcriptional control of the arginine/lysine transporter, cat-1, by physiological stress.
    J Biol Chem. 278(50):50000-9.

  • Yaman I*, Fernandez J*, Liu H, Caprara M, Komar AA, Koromilas AE, Zhou L, Snider MD, Scheuner D, Kaufman RJ, Hatzoglou M. (2003) The zipper model of translational control: a small upstream ORF is the switch that controls structural remodeling of an mRNA leader. (*Equal contribution)
    Cell 2003, 113(4):519-31.

  • Yaman I, Fernandez J, Sarkar B, Schneider RJ, Snider MD, Nagy LE, Hatzoglou M (2002) Nutritional control of mRNA stability is mediated by a conserved AU-rich element that binds the cytoplasmic shuttling protein HuR.
    J Biol Chem. 277(44):41539-46.

  • Fernandez J, Yaman I, Sarnow P, Snider MD, Hatzoglou M. (2002) Regulation of internal ribosomal entry site-mediated translation by phosphorylation of the translation initiation factor eIF2alpha.
    J Biol Chem. 2002, 277(21):19198-205.

  • Fernandez J, Yaman I, Merrick WC, Koromilas A, Wek RC, Sood R, Hensold J, Hatzoglou M (2002) Regulation of internal ribosome entry site-mediated translation by eukaryotic initiation factor-2alpha phosphorylation and translation of a small upstream open reading frame.
    J Biol Chem. 277(3):2050-8.

  • Fernandez J, Yaman I, Mishra R, Merrick WC, Snider MD, Lamers WH, Hatzoglou M (2001) Internal ribosome entry site-mediated translation of a mammalian mRNA is regulated by amino acid availability.
    J Biol Chem. 276(15):12285-91.